MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), …

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization Kuraku, Zmasek, Nishimura, Katoh 2013 (Nucleic Acids Research 41:W22-W28)

Accurate options (mafft-linsi, mafft-ginsi and mafft-einsi), instead of mafft, can be used for a few hundreds of sequences. aligned_sequences must form a monophyletic cluster, as they are …

MAFFT offers various multiple alignment strategies. They are classified into three types, (a) the progressive method, (b) the iterative refinement method with the WSP score, and (c) the …

Indicates the location of the binary files used by mafft. By default, they are searched in /usr/local/lib/mafft, but on Debian systems, they are searched in /usr/lib/mafft.

Multiple sequence alignment software for Windows.Three versions for Windows. Ubuntu version Includes text-based interactive mode for basic functions and command-line mode for full …

Running MAFFT efficiently with a large (>∼8GB) RAM How to select an appropriate strategy for a relatively small (up to ∼200 sequences × ∼5,000 residues) sequence alignment

Copy the downloaded .zip file into a folder to install MAFFT. Better to avoid the Desktop and Documents folders, because these folders may be protected by "Controlled folder access" in …

MAFFT requires memory space proportional to L2 by default, where L is sequence length. When the --memsave option is added or alignment length exceeds a threshold, a linear-space DP …

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; recommended for <200 sequences), …